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GDB-3402 Create project skeleton

Svilen Velikov requested to merge feature/GDB-3402-Organize-project-skeleton into master

All defined classes, interfaces and enum JSDocs annotations and documentation Fixed existing tests after class renaming Old repository related implementations were moved in separated package and would be kept for reference until the new implementation is ready.

Affected issue: https://jira.ontotext.com/browse/GDB-3402

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